PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050275
Common NameLOC102586220
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 389aa    MW: 42896.5 Da    PI: 4.8541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050275genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18120169255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r ++ +g+W+AeIrdp     +  r+++g+f taeeAa+a++a +++++g
  PGSC0003DMP400050275 120 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWIGTFNTAEEAARAYDAEARRIRG 169
                           69*******.**********94....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.736120177IPR001471AP2/ERF domain
SMARTSM003804.0E-33120183IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21120179IPR016177DNA-binding domain
CDDcd000183.96E-31120178No hitNo description
Gene3DG3DSA:3.30.730.102.6E-31120179IPR001471AP2/ERF domain
PfamPF008471.7E-11121169IPR001471AP2/ERF domain
PRINTSPR003673.5E-11121132IPR001471AP2/ERF domain
PRINTSPR003673.5E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MCGGAIISDR IPPPRSSSRL TADQLWGCSD VQNKKKKNKN KKRNPSNYHS KSLRFENVDF  60
EADFLDFKDF SDDEEAYCLD IKPFAFSASE LYGTSAGSES LISVDAKEVE KSSKRQRKNQ  120
YRGIRKRPWG KWAAEIRDPQ KGVRVWIGTF NTAEEAARAY DAEARRIRGN KAKVNFPDEA  180
SVPASRQAGK VNPRKVLSDE SSNPVLSNTM FMNNLNSGYC DNLGLLEVKT KTLYGYEALC  240
ATPVDTGPNS YARPAVAGVY FNSDQGSNSF GPTDFGWGET CSRTPDISSV LSAAIECDEA  300
QFIEGVDLEE KPKSCSNNLV PDDVNTAHKP PEEFSTFESQ MKFYQTPYSE GNLDVPVDAF  360
LNADATQGGE NAMNLWSFDE LSSLMGGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21120177260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113127KRQRKNQYRGIRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050275
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134350.0BT013435.1 Lycopersicon esculentum clone 132076R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362095.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_006362096.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLM1CTE30.0M1CTE3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000742480.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.27e-50related to AP2 12
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]