PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050229
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 159aa    MW: 18236.8 Da    PI: 9.8656
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050229genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like932.4e-291366255
               G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          prlrWtp+LH+ F++ v++LGG +kAtPk+i+++m +kgL ++hvkSHLQ+YR 
  PGSC0003DMP400050229 13 PRLRWTPQLHHLFIQSVQNLGGRNKATPKRIVQMMAIKGLKISHVKSHLQMYRN 66
                          8****************************************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-251268IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-221366IPR006447Myb domain, plants
SuperFamilySSF466892.51E-131368IPR009057Homeodomain-like
PfamPF002494.5E-71465IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKEVRKYKKS LVPRLRWTPQ LHHLFIQSVQ NLGGRNKATP KRIVQMMAIK GLKISHVKSH  60
LQMYRNMREH PSLHVVMPDF NLSSPMHVSK ILGEHAQNSS KQKESGSKNG ENIHYNYYQE  120
AEGSISSGMT KEEEEDNAGE IYEYRETSTQ INLDLTLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-171468357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-171468357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-171468357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-171468357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050229
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754513e-57HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352000.11e-115PREDICTED: probable transcription factor KAN4
TrEMBLM1CTB41e-113M1CTB4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000741831e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94591325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-25G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]