PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400050197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | CO-like | ||||||||
Protein Properties | Length: 409aa MW: 45120.2 Da PI: 5.0799 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 3e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ PGSC0003DMP400050197 4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 7*****************************65777777776 PP | |||||||
2 | zf-B_box | 26.3 | 1.5e-08 | 46 | 89 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C + ++ lC++C ++H + H+++ PGSC0003DMP400050197 46 LICERCNSQPAVVRCVEERTSLCQNCDWSGHASsssgssmHKRQ 89 68*****************************7778888888875 PP | |||||||
3 | CCT | 58 | 3.3e-20 | 352 | 394 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R +a+lRYkeK+ktRkF+K++rY sRKa+A+ R RvKGrF k+ PGSC0003DMP400050197 352 RSNAVLRYKEKKKTRKFDKRVRYVSRKARADVRRRVKGRFIKA 394 899*************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.80E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 4.4E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.015 | 43 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.28E-4 | 47 | 73 | No hit | No description |
SMART | SM00336 | 0.72 | 48 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.922 | 352 | 394 | IPR010402 | CCT domain |
Pfam | PF06203 | 5.5E-15 | 352 | 394 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC 60 VEERTSLCQN CDWSGHASSS SGSSMHKRQA LSCYTGCPSA AELSNIWSFL LDDPSIGDTC 120 EQRMGSMSIN DNRPRDGQDT QGKDNSQNVC AAVEVNDMNI SEKSNLLVES SMPTFDNKLH 180 NVEPPIGSSS KGCYMGAKGS SLIEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE 240 NENLDSFFGM KDIKGADYSY RGVNAAEGSS NWRVNTVQPT CSDAASADSM MSCKTDSILY 300 FARQSSLSVS NQTGGECSAG DHQDCGVSPM LLMGEPPWCP PCTEISSTST SRSNAVLRYK 360 EKKKTRKFDK RVRYVSRKAR ADVRRRVKGR FIKAGDAYDY DPLPTRSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400050197 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251549.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Refseq | XP_010313684.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 1e-131 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | M1CT82 | 0.0 | M1CT82_SOLTU; B-box zinc finger protein 8 | ||||
STRING | PGSC0003DMT400074143 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 3e-97 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400050197 |
Publications ? help Back to Top | |||
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