PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050146
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 386aa    MW: 42168.8 Da    PI: 5.1255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050146genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-06342364729
                           HHHHHHHHHHHHHHHHHHCTSCC CS
                   HLH   7 erErrRRdriNsafeeLrellPk 29 
                           ++ErrRR+++N+++  Lr+++P 
  PGSC0003DMP400050146 342 MAERRRRKKLNDRLYMLRSVVPR 364
                           79********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-7333367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.689335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-5342369No hitNo description
Gene3DG3DSA:4.10.280.104.3E-6342367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLSRVNSMVW DMEGKQEEEK EETFTNKEDT TNGELGNKED MELGALSTFK SMLDGTDVDW  60
YHNNMQNHTE NICFTQNFTE LAENSMFLQP VVPVDSSSSC SPSSVSVFNN LDPSQVHYFL  120
AQKAINNNPL DYGFNLGCEN GFLEAQGMGG LNKGGFLLAG GGFHDLSSQN QMGNPNLNSF  180
TQYPSSHLPQ NSSTTGFSPL GFVDGSANEN SLFLNRSKLL KPLDNFASIG AQPTLFQKRA  240
ALRKNLANST GGSLGDFGGE IGQNSINGEG ERKRKWGNGE ELDDVSFDGC TLSYDSDDLT  300
ENVTNKVDDS VKNGGNSSNA TSTVTGGNQK GKKKGLPAKN LMAERRRRKK LNDRLYMLRS  360
VVPRISKVTN CLHQILVNSC MIILF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331349KKKGLPAKNLMAERRRRKK
2343350ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365416.10.0PREDICTED: transcription factor ICE1-like
TrEMBLM1CT380.0M1CT38_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000740750.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-33bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]