PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400050122 | ||||||||
Common Name | LOC102590983 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 35179.2 Da PI: 5.7393 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.3 | 2e-55 | 6 | 133 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhP+deel+++yL +kv++ ++++ ++i +vd++k+ePwdLp+k++ +ekewyfF ++d+ky+tg r+nrat++gyWk+tgkd PGSC0003DMP400050122 6 LPPGFRFHPSDEELITYYLSNKVSDFSFTT-RAIVDVDLNKSEPWDLPAKASMGEKEWYFFNQKDRKYPTGLRTNRATEAGYWKTTGKD 93 79*************************999.88***************999999*********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ + elvg+kktLvfykgrapkgekt+Wvmheyrle PGSC0003DMP400050122 94 KEIFRGGVELVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 133 *****99999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-61 | 3 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.27 | 6 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MDEKNLPPGF RFHPSDEELI TYYLSNKVSD FSFTTRAIVD VDLNKSEPWD LPAKASMGEK 60 EWYFFNQKDR KYPTGLRTNR ATEAGYWKTT GKDKEIFRGG VELVGMKKTL VFYKGRAPKG 120 EKTNWVMHEY RLESNLGFKP PKEEWVVSRL FHKNSSVKKS NATSSSQQSD QVESPCDTYT 180 LAKEFAEYHH QPNFNRVPAP PSIEGEIFNL QNYTNQGNMN LDALPSVNSL LFRALQFRGN 240 YNYQQRDIDP STTIINTLDY PYNIQSQDTM GNFNLLEPPS SSLAFDSLQP QPPEQSYQLD 300 STIWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-53 | 1 | 159 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-53 | 1 | 159 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-53 | 1 | 159 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-53 | 1 | 159 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-53 | 1 | 159 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-53 | 1 | 159 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-53 | 1 | 159 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400050122 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-133 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365421.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLR3 | 1e-76 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | M1CT22 | 0.0 | M1CT22_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400074048 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-101 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400050122 |
Entrez Gene | 102590983 |
Publications ? help Back to Top | |||
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