PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 162aa    MW: 18053.1 Da    PI: 4.4469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049990genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-193281255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  PGSC0003DMP400049990 32 TYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFNTSVEAARAYDDAARRLYG 81
                          69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.75E-193187No hitNo description
PfamPF008471.7E-133281IPR001471AP2/ERF domain
PROSITE profilePS5103221.8383289IPR001471AP2/ERF domain
SMARTSM003801.9E-343295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-303290IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-213289IPR016177DNA-binding domain
PRINTSPR003671.3E-103344IPR001471AP2/ERF domain
PRINTSPR003671.3E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MAECVESKKS IVGRSRKGCM RGKGGPENAL CTYRGVRQRT WGKWVAEIRE PNRGARIWLG  60
TFNTSVEAAR AYDDAARRLY GSDAKLNLSE EEESIISSDT EISCMENNII EECSVLEEAS  120
IFKDGNGEYL VWDTPAPNLL GLDFHGDATS FNWTDEPEIM Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-173388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-173388662ATERF1
3gcc_A8e-173388662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049990
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9157401e-31CU915740.3 S.lycopersicum DNA sequence from clone LE_HBa-103J9, complete sequence.
GenBankHG9754431e-31HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-31HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159381.11e-117PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618273e-43DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLM1CSS81e-115M1CSS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000738531e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]