PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400049990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 18053.1 Da PI: 4.4469 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r +r++lg+f t eAa+a++ a+++l+g PGSC0003DMP400049990 32 TYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFNTSVEAARAYDDAARRLYG 81 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.75E-19 | 31 | 87 | No hit | No description |
Pfam | PF00847 | 1.7E-13 | 32 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.838 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-34 | 32 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 32 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-21 | 32 | 89 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-10 | 33 | 44 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MAECVESKKS IVGRSRKGCM RGKGGPENAL CTYRGVRQRT WGKWVAEIRE PNRGARIWLG 60 TFNTSVEAAR AYDDAARRLY GSDAKLNLSE EEESIISSDT EISCMENNII EECSVLEEAS 120 IFKDGNGEYL VWDTPAPNLL GLDFHGDATS FNWTDEPEIM Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-17 | 33 | 88 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-17 | 33 | 88 | 6 | 62 | ATERF1 |
3gcc_A | 8e-17 | 33 | 88 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400049990 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU915740 | 1e-31 | CU915740.3 S.lycopersicum DNA sequence from clone LE_HBa-103J9, complete sequence. | |||
GenBank | HG975443 | 1e-31 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 1e-31 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159381.1 | 1e-117 | PREDICTED: dehydration-responsive element-binding protein 2G-like | ||||
Swissprot | P61827 | 3e-43 | DRE2G_ARATH; Dehydration-responsive element-binding protein 2G | ||||
TrEMBL | M1CSS8 | 1e-115 | M1CSS8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400073853 | 1e-116 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 3e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400049990 |
Publications ? help Back to Top | |||
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