PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049927
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 263aa    MW: 30275.5 Da    PI: 6.3189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049927genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08155195954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  PGSC0003DMP400049927 155 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 195
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14151211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.64E-11152200No hitNo description
SMARTSM003534.5E-12152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-13152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6156195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSNMDNEHVF RDQQQQQQQP CLSSIPNDHI YHDHHHHHQQ QQQFHFEHNP IWPSFPLQNP  60
QHHHLPSSSS QQQQQEEVVP FDHVLNNHVQ TLIEDHNNQE HDDQDEDEEE EELGAMKEMM  120
FKIASMQPVD IDPSTIRKPK RRNVRISNDP QSVAARLRRE RISEKIRILQ RLVPGGTKMD  180
TASMLDEAIR YVKFLKRQIR NLQSSNHNLP PAQIPGPSCP NNENWANIVT PSTKGLILGS  240
SSNVTTFVGN TTSDPTYEVI GN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049927
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015058044.11e-124transcription factor HEC3-like
TrEMBLM1CSM20.0M1CSM2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000737600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.15e-45bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]