PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049785
Common NameLOC102586012
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 338aa    MW: 38301.4 Da    PI: 4.9041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049785genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14135186155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r +h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  PGSC0003DMP400049785 135 QRITHIAVERNRRKQMNEYLSVLRTLMPES---YVQRGDQASIVSGAINYVKELE 186
                           799***************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.72E-14133190No hitNo description
SuperFamilySSF474599.29E-18134203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.631134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-15134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-12135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALEAITQQQ QYLYALLGTT NWSIGSGSGS GSSSDYHNNE AFDEFLPNNQ NVTAPQEYEN  60
YSNWNLPAPL LVDSQNEFNQ WGQNSSSVLD HNFTIVDQQE QQAQLDSPIE MSSSTTRPRR  120
RRTRTKKNDE EIENQRITHI AVERNRRKQM NEYLSVLRTL MPESYVQRGD QASIVSGAIN  180
YVKELEQQLQ FLSGQKHLTS QNQEANGETS PFSEFFSIPQ YSTTMSAATT TSENVCCENE  240
YYRNQQLPAT ADIEVTMVEN HANLKIRSKK RPRLLPTIIS GLESHRLSVL HLNVSKVDQF  300
VLCSLSLKVE EDCKMNSVED IAAVVNQILS RIHEEAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123RPRRRRTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049785
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331330.0AC233133.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361869.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T41e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLM1CS960.0M1CS96_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000735740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]