PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049609
Common NameLOC102603982
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 183aa    MW: 20849.4 Da    PI: 7.1134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049609genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18755254
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                          +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  PGSC0003DMP400049609  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                          69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-33664No hitNo description
PfamPF008476.4E-11756IPR001471AP2/ERF domain
PROSITE profilePS5103220.297764IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-20765IPR016177DNA-binding domain
SMARTSM003806.8E-40770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-33764IPR001471AP2/ERF domain
PRINTSPR003679.4E-11819IPR001471AP2/ERF domain
PRINTSPR003679.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFAFNDSDS HSSSSTKYLS AALIAKLQRC QMKSLNMVNN RPGTMKLEDE NNQLSSCHQL  120
GNRGDHGIAR RNVQMSVEMP VSYESQAEST QQFKSLEDHQ IEQMIEELLD YGSIELCSVL  180
QE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15863662ATERF1
3gcc_A1e-15863662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049609
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-162HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356236.11e-136PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-65ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM1CRU81e-134M1CRU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000733341e-135(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.19e-54ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]