PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400049605 | ||||||||
Common Name | LOC107062282 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 22800.5 Da PI: 7.6666 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 64 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H PGSC0003DMP400049605 64 FSCNYCYRNFYSSQALGGHQNAH 86 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.49E-6 | 60 | 92 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 64 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDSQNQSAPR QQDDKQENDG LILDLSLLCN WELKPTDDQI IKTSDHTCHT ISSSEDDETE 60 HQVFSCNYCY RNFYSSQALG GHQNAHKRER ITMAKRKQSI ASVPILHRSL GIEAHSMIHK 120 PNISSNTFTA PAISPLLYNT HSAGMRSRRR LDQFPGIDRP ESHRTSFGDG APRLNFGYMN 180 KFPTVVSSQE DLKKLDLSLK L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400049605 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-108 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168246.1 | 1e-151 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | M1CRU4 | 1e-149 | M1CRU4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400073330 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15930 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 3e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400049605 |
Entrez Gene | 107062282 |
Publications ? help Back to Top | |||
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