PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049547
Common NameLOC102592614
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BES1
Protein Properties Length: 326aa    MW: 35191.2 Da    PI: 7.995
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049547genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222075.3e-6421441148
                DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89 
                           ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e++++ g s s+s
  PGSC0003DMP400049547   2 TSGTRQPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYRKGCKPVERMDI-GGSVSVS 89 
                           5899************************************************************************77775.66899** PP

                DUF822  90 pesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148
                           p+ss+q+s+ +s+ +spv+s+ +sp ss++ s+++ +    ++++sl+p+l++ls+ ss
  PGSC0003DMP400049547  90 PCSSYQLSPGASYNPSPVSSSIPSPISSHYVSNVQNN----SDPNSLIPWLKNLSSGSS 144
                           ******6666666666666666666666666666533....34489*******998443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.9E-653140IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTSGTRQPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCKEAG  60
WIVEEDGTTY RKGCKPVERM DIGGSVSVSP CSSYQLSPGA SYNPSPVSSS IPSPISSHYV  120
SNVQNNSDPN SLIPWLKNLS SGSSPSSSKF PHHLCIPGGS ISAPVTPPLS SPTASTPRMN  180
DNWENPTANS TWIQQHYPFL PYSTPPSPGR QTPPDSGWLS GVQTPQDGPS SPTFSLVSSN  240
PFGFKEPLSN GGSRMWTPGQ SGTCSPAVGP CMDQTGDVPM SDVISAEFAF GSNMKGVVKP  300
WEGERIHEEC ISDDLELTLG NSSTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049547
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358089.10.0PREDICTED: BES1/BZR1 homolog protein 4 isoform X2
RefseqXP_006358090.10.0PREDICTED: BES1/BZR1 homolog protein 4 isoform X3
SwissprotQ9ZV881e-127BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLM1CRN80.0M1CRN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000732500.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-105BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]