PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049438
Common NameLOC107062755
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 341aa    MW: 38450 Da    PI: 7.0405
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049438genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind87.22.2e-27411312101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+ye+++d+e++ l++w++++++f+++d+++f  +vLpkyFkhsn++SF+ QLn Y F+kv + +          e+ +++F++gk
  PGSC0003DMP400049438  41 FLVKTYEMVDDPETDPLVHWTSSKTTFLITDPNKFCVEVLPKYFKHSNLSSFIYQLNNYRFRKVCSYK---------CEYGNPWFRAGK 120
                           9****************************************************************999.........67********** PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           k+ l++ik + 
  PGSC0003DMP400049438 121 KHWLKNIKSRI 131
                           ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-2935125IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-2936129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-3737130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-164164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-2541129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-167991IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-1692104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEINNQENGG KGGGGRRRGG GAVGRGRPRL TGLRGNSPPP FLVKTYEMVD DPETDPLVHW  60
TSSKTTFLIT DPNKFCVEVL PKYFKHSNLS SFIYQLNNYR FRKVCSYKCE YGNPWFRAGK  120
KHWLKNIKSR IQLSKENNPQ QGSHSPRVDL VNNNLEEELE KLRNDHISLR VELQKLKDGQ  180
ENMRSFFPML LGCGKEKEIR NIMKLLLEKS EVRGDSSSND TTKRPRLVES PDRVAGSVQD  240
GIGQTSNSAG GSVSSNEKQK EEATAQNAKN REFWEKLFED DSESKNEGAE ESEQELNRSR  300
AMAEIEEMVE SKIAMEGEAL IAKAAASLND ETEAYLQLWT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-21101311130Heat shock factor protein 1
5d5v_B4e-21101311130Heat shock factor protein 1
5d5v_D4e-21101311130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320GGRRRGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169233.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLM1CRG30.0M1CRG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000730650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-37heat shock transcription factor A2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]