PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049315
Common NameLOC102588691
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family YABBY
Protein Properties Length: 162aa    MW: 17902.3 Da    PI: 8.7533
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049315genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY147.81.1e-4521452163
                 YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 
                           d +++se++Cyv+CnfCnt+lav +P++ l+ +vtv+CGhC++l  ++ +        +     +       +++ + + + s  +++ 
  PGSC0003DMP400049315   2 DCVQTSEHLCYVRCNFCNTVLAVGIPYKRLMDTVTVKCGHCSNLSFLSTRPP-----IQG----QC-----FDHQPNLQGYCSEFINKG 76 
                           77899*************************************9755332222.....222....22.....222333333444444444 PP

                 YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                           +as+s ss    ++++  +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  PGSC0003DMP400049315  77 QASSSASS----TSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAENPEIPHREAFSAAAKNWARY 145
                           44444443....556677899999***********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-546145IPR006780YABBY protein
SuperFamilySSF470951.83E-989143IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.2E-699144IPR009071High mobility group box domain
CDDcd013905.39E-7106142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDCVQTSEHL CYVRCNFCNT VLAVGIPYKR LMDTVTVKCG HCSNLSFLST RPPIQGQCFD  60
HQPNLQGYCS EFINKGQASS SASSTSSEPL SPKAPFVVKP PEKKHRLPSA YNRFMKEEIQ  120
RIKAENPEIP HREAFSAAAK NWARYIPNPP NGSLSGNTNN V*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677490.0KJ667749.1 Solanum sisymbriifolium CRC protein mRNA, complete cds.
GenBankKJ6677500.0KJ667750.1 Solanum aethiopicum CRC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348666.11e-118PREDICTED: protein CRABS CLAW
SwissprotQ76EJ01e-61YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM1CR551e-117M1CR55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000728931e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.19e-62YABBY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]