PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400049314 | ||||||||
Common Name | LOC102588691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | YABBY | ||||||||
Protein Properties | Length: 117aa MW: 12917.9 Da PI: 8.7637 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 83.8 | 4.8e-26 | 2 | 116 | 2 | 134 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 d +++se++Cyv+CnfCnt+lav +P++ l+ +vtv+CGhC++l ++ + + + +++ + + + s +++ PGSC0003DMP400049314 2 DCVQTSEHLCYVRCNFCNTVLAVGIPYKRLMDTVTVKCGHCSNLSFLSTRPP-----IQG----QC-----FDHQPNLQGYCSEFINKG 76 77899*************************************9755332222.....222....22.....222333333444444444 PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 +as+s ss ++++ +p++p v++PPek+ r Psaynrf+k PGSC0003DMP400049314 77 QASSSASS----TSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMK 116 44444443....556677899999******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-31 | 6 | 116 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MDCVQTSEHL CYVRCNFCNT VLAVGIPYKR LMDTVTVKCG HCSNLSFLST RPPIQGQCFD 60 HQPNLQGYCS EFINKGQASS SASSTSSEPL SPKAPFVVKP PEKKHRLPSA YNRFMK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400049314 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667749 | 1e-143 | KJ667749.1 Solanum sisymbriifolium CRC protein mRNA, complete cds. | |||
GenBank | KJ667750 | 1e-143 | KJ667750.1 Solanum aethiopicum CRC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348666.1 | 8e-83 | PREDICTED: protein CRABS CLAW | ||||
Swissprot | Q76EJ0 | 3e-43 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | M1CR55 | 2e-81 | M1CR55_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400072893 | 3e-82 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 2e-35 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400049314 |
Entrez Gene | 102588691 |
Publications ? help Back to Top | |||
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