PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400049211
Common NameLOC102588358
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SBP
Protein Properties Length: 559aa    MW: 62482.9 Da    PI: 7.617
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400049211genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1331e-41233309177
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                           +Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  PGSC0003DMP400049211 233 VCQVHGCNKDLSSSKDYHKRHKVCNEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 309
                           6**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33229295IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.419231308IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-39232313IPR004333Transcription factor, SBP-box
PfamPF031104.1E-32234307IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MEPLSYALEG RGLIFPDNVE LSVDTVSRSR SIVKEWNLNP FCDVDKSICG FSQEVTESTE  60
FLGSGIADIL KKSAASNPCP GVLSGEMSDG CGKMLSSTSM FNTFEPIPGE VGLGAMFNQR  120
ATKSNNPMSS LIDLKLEELT DHGELRTSQS SKESSILSSP ESSLAAGKAQ TKRLHSQFSI  180
TQVRGQKEVE STTVYREIKS NQSLKRNSAL SSVNSSLQGK RLRTTNFHSE IPVCQVHGCN  240
KDLSSSKDYH KRHKVCNEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG  300
HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN NKHLKLEHKP  360
FGISQLAMSV KNEQFPAKSI QHHYGVKKQD PSKVLSGGET LSVQEFSEGQ NSSCALSLLS  420
AHSQNLLHNS TDVSPTLRWT VEPNHHVYIK GDHHNLEKSP RVSVANRLTP IELYSFDVAE  480
QDAVVQVPDS DAVSFGIQRD HGHDQRSNSI NSRNCLSPEF GPTMDLVQLS SHLQRVEQQK  540
NSVQVKQEND IFCSFTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28229307684squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400049211
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348665.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLM1CQV70.0M1CQV7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000727450.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.17e-50SBP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]