PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400048954

Common Name

LOC102583015

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 416aa MW: 48785.5 Da PI: 8.1475

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400048954	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84	1.9e-26	106	191	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++ +k+plW+evs+ m +e ++rs k+C+ek+enl k+ykk+k g+ +r ++ ++++yf+qlea PGSC0003DMP400048954 106 RWPRQETLTLLEVRSQLDSKFKEAIQKGPLWDEVSRIMsEEYRYQRSGKKCREKFENLYKYYKKTKGGKAGR--QDGKHYRYFRQLEA 191 8***********************************77789***********************98..55667*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.992	105	164	IPR017877	Myb-like domain
CDD	cd12203	1.86E-15	106	163	No hit	No description
Pfam	PF13837	3.1E-18	106	192	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDDHQYGMMD LTQYLNGRPL FPSVSPNLTP DLLCGNQHFD MLMATTTATT TTTHVPQHDN 60 YLPHHHHYHY HHGFLPESST VAAATGASVS GGCTLSALEM EGGNGRWPRQ ETLTLLEVRS 120 QLDSKFKEAI QKGPLWDEVS RIMSEEYRYQ RSGKKCREKF ENLYKYYKKT KGGKAGRQDG 180 KHYRYFRQLE ALYGKTSNTI NTNTFHHQVH YNQEPHHCPK LSDNNLYDSS DSDDSDNSSN 240 DENDDSKRKN IKKKGKRSWK GKIRDFMDIQ MRKLMEKQDI WLEKMMKTIE DKEQERVLRE 300 EEWRKKEEIR LEKQQKFWAD ERAWIEARDA VLIGTLRKLN GEKIMKSSTT NYNDENGSMF 360 YYNKKQKEMN SLSSSCYNNF QIKNEEERRI SYCETSRHVP NIHDTIDDGY VARIL*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDDHQYGMMD LTQYLNGRPL FPSVSPNLTP DLLCGNQHFD MLMATTTATT TTTHVPQHDN  60
YLPHHHHYHY HHGFLPESST VAAATGASVS GGCTLSALEM EGGNGRWPRQ ETLTLLEVRS  120
QLDSKFKEAI QKGPLWDEVS RIMSEEYRYQ RSGKKCREKF ENLYKYYKKT KGGKAGRQDG  180
KHYRYFRQLE ALYGKTSNTI NTNTFHHQVH YNQEPHHCPK LSDNNLYDSS DSDDSDNSSN  240
DENDDSKRKN IKKKGKRSWK GKIRDFMDIQ MRKLMEKQDI WLEKMMKTIE DKEQERVLRE  300
EEWRKKEEIR LEKQQKFWAD ERAWIEARDA VLIGTLRKLN GEKIMKSSTT NYNDENGSMF  360
YYNKKQKEMN SLSSSCYNNF QIKNEEERRI SYCETSRHVP NIHDTIDDGY VARIL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400048954

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339311.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	4e-85	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	M1CQ85	0.0	M1CQ85_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400072404	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3063	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	2e-55	Trihelix family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400048954
Entrez Gene	102583015

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]