PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400048932 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 394aa MW: 43706.9 Da PI: 6.1912 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.9 | 4.7e-33 | 28 | 82 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl PGSC0003DMP400048932 28 KPRLKWTPDLHERFIEAVTQLGGADKATPKSVLKLMGIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.132 | 25 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-31 | 26 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-16 | 27 | 85 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 28 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-10 | 30 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.2E-15 | 127 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 394 aa Download sequence Send to blast |
MSFPERHLFL QGGNANGDSG LVLSTDAKPR LKWTPDLHER FIEAVTQLGG ADKATPKSVL 60 KLMGIPGLTL YHLKSHLQKY RLSKNHHGQA NLSGVNKAAA SMEKICESTG SPTSNPSIGP 120 QPNNNIPISE AIQMQIDVQR RLHEQLELRI EAQGKYLQAV LEKAQETLGT QNLGTIGFEA 180 AKVQLSDLVS KVSNQCLNSA FSEIQELSGF HTPQTQATQR LADCSMDSCL TSSEGPLRDL 240 QEMHNNQLGL RTLNFGPCTE EIENQTRLQQ TALRWRDDLK ENRLFPKMDE DTEKEFAKET 300 NWSNLSMNVG IQGGKRNVNS SYVDGRLNGI DADIKLFHQA ATDRSDSTKP EKQVSPQEYK 360 LPYFAPKLDL NTDDQTDAAS NCKQLDLNGF SWN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-22 | 28 | 84 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-22 | 27 | 84 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400048932 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339132.1 | 0.0 | PREDICTED: uncharacterized protein LOC102602766 isoform X3 | ||||
Swissprot | Q9SQQ9 | 1e-117 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | M1CQ64 | 0.0 | M1CQ64_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400072373 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04030.1 | 1e-122 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400048932 |
Publications ? help Back to Top | |||
---|---|---|---|
|