PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048930
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 399aa    MW: 44397.8 Da    PI: 6.4405
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048930genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.94.8e-332882155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl
  PGSC0003DMP400048930 28 KPRLKWTPDLHERFIEAVTQLGGADKATPKSVLKLMGIPGLTLYHLKSHLQKYRL 82
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1322585IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-312684IPR009057Homeodomain-like
SuperFamilySSF466891.02E-162785IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-232883IPR006447Myb domain, plants
PfamPF002499.9E-103081IPR001005SANT/Myb domain
PfamPF143798.1E-25126172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSFPERHLFL QGGNANGDSG LVLSTDAKPR LKWTPDLHER FIEAVTQLGG ADKATPKSVL  60
KLMGIPGLTL YHLKSHLQKY RLSKNHHGQA NLSGVNKAAS MEKICESTGS PTSNPSIGPQ  120
PNNNIPISEA IQMQIDVQRR LHEQLEVQRH LQLRIEAQGK YLQAVLEKAQ ETLGTQNLGT  180
IGFEAAKVQL SDLVSKVSNQ CLNSAFSEIQ ELSGFHTPQT QATQRLADCS MDSCLTSSEG  240
PLRDLQEMHN NQLGLRTLNF GPCTEEIENQ TRLQQTALRW RDDLKENRLF PKMDEDTEKE  300
FAKETNWSNL SMNVGIQGGK RNVNSSYVDG RLNGIDADIK LFHQAATDRS DSTKPEKQVS  360
PQEYKLPYFA PKLDLNTDDQ TDAASNCKQL DLNGFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-212884157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-212784158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048930
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339131.10.0PREDICTED: uncharacterized protein LOC102602766 isoform X2
SwissprotQ9SQQ91e-125PHL9_ARATH; Myb-related protein 2
TrEMBLM1CQ620.0M1CQ62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000723730.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-127G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]