PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400048927

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 338aa MW: 37726.1 Da PI: 6.052

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400048927	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	28.9	2.5e-09	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+++gLtl+h+kSHLQkYRl PGSC0003DMP400048927 1 MGIPGLTLYHLKSHLQKYRL 20 899****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-8	1	22	IPR009057	Homeodomain-like
Pfam	PF14379	6.4E-25	65	111	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGIPGLTLYH LKSHLQKYRL SKNHHGQANL SGVNKAAASM EKICESTGSP TSNPSIGPQP 60 NNNIPISEAI QMQIDVQRRL HEQLEVQRHL QLRIEAQGKY LQAVLEKAQE TLGTQNLGTI 120 GFEAAKVQLS DLVSKVSNQC LNSAFSEIQE LSGFHTPQTQ ATQRLADCSM DSCLTSSEGP 180 LRDLQEMHNN QLGLRTLNFG PCTEEIENQT RLQQTALRWR DDLKENRLFP KMDEDTEKEF 240 AKETNWSNLS MNVGIQGGKR NVNSSYVDGR LNGIDADIKL FHQAATDRSD STKPEKQVSP 300 QEYKLPYFAP KLDLNTDDQT DAASNCKQLD LNGFSWN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400048927

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006339130.1	0.0	PREDICTED: uncharacterized protein LOC102602766 isoform X1
Swissprot	Q9SQQ9	1e-86	PHL9_ARATH; Myb-related protein 2
TrEMBL	M1CQ59	0.0	M1CQ59_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400072373	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	6e-89	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400048927

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]