PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048818
Common NameLOC102585758
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 267aa    MW: 29148.9 Da    PI: 7.8845
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048818genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.78.5e-3188141155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           +prl+Wtp+LH+rFv+av+qL G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  PGSC0003DMP400048818  88 RPRLVWTPQLHKRFVDAVAQL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 141
                           59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.24285144IPR017930Myb domain
SuperFamilySSF466891.52E-2085145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-3186146IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-2489141IPR006447Myb domain, plants
PfamPF002494.1E-891140IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MREEDSNWFA KWEEELPSPK ELMPLSQTLI TPNLAIAFDI QNPNTPNPKI SPLVHTLSSA  60
EFESNSAELG GMAGSSGVGD EPARTQKRPR LVWTPQLHKR FVDAVAQLGI KNAVPKTIMQ  120
LMSVDGLTRE NVASHLQKYR LYLKRMQGFC NSGSVYGAGV DPATDHLFAS SPVPAHFLHP  180
GRGNSDHYMP FVPVAAVIGH APQLQQQYRH FGSPPNGQFE VPFLPRQSQQ SVQRMGTSVH  240
SSSSVLESAT AANGRKVLTL FPNGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-3188144157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048818
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339253.10.0PREDICTED: transcription factor PCL1-like
SwissprotO222102e-61MYBC1_ARATH; Transcription factor MYBC1
TrEMBLM1CPV30.0M1CPV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000722130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-85G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]