PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048526
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 167aa    MW: 18585.7 Da    PI: 8.4252
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048526genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.6e-08129157131
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krf 31 
                           s+y+GV++++++grW+++I+ ++       k+f
  PGSC0003DMP400048526 129 SQYRGVTFYRRTGRWESHIWSVY----FlqKKF 157
                           78*****************9942....123555 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
METVTASGKL KELSFGQIEN SGTSNSSIVN VETSSTAGDD EFISCSDQRT DGYAFEILRA  60
DYEGNGFVTK ELFPLTGGES AAPPSQQQQW LDLSGNYSDV PMEQRIVLGP PQLRQQVKKS  120
RRGPRSRSSQ YRGVTFYRRT GRWESHIWSV YFLQKKFPIT VVFGLG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048526
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400570.0AC240057.1 Solanum tuberosum cultivar RH89-039-16 chromosome 9 clone RH186C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086400.11e-88ethylene-responsive transcription factor RAP2-7-like
RefseqXP_015086406.11e-88ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9LVG26e-24TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLM1CP771e-119M1CP77_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000717321e-102(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.26e-19target of early activation tagged (EAT) 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]