PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400048524
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 443aa    MW: 48324.6 Da    PI: 7.5411
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400048524genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-17129178155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PGSC0003DMP400048524 129 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 178
                           78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-9129178IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-16129188IPR016177DNA-binding domain
SMARTSM003809.6E-32130192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17130187IPR001471AP2/ERF domain
CDDcd000188.49E-12130188No hitNo description
PROSITE profilePS5103217.82130186IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-6221266IPR016177DNA-binding domain
CDDcd000183.71E-13221266No hitNo description
SMARTSM003807.7E-13222270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
METVTASGKL KELSFGQIEN SGTSNSSIVN VETSSTAGDD EFISCSDQRT DGYAFEILRA  60
DYEGNGFVTK ELFPLTGGES AAPPSQQQQW LDLSGNYSDV PMEQRIVLGP PQLRQQVKKS  120
RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLD  180
ADINFNVSDY HDDLKQMGNF SKEEFVHVLR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ  240
FLGKKAYDKA AIKCNGREAV TNFELSTYEG ELSTEADNGG ADHNLDLNLG IAPSVFADDQ  300
GGNTCQMGNY VVQCVSNGLP GYGGAMNIPT TTMGGKLLHG HQLLTDRPLL WNGVNTSIFP  360
TLKGTALGKG IEVDSSPNWT RQDQHPYGGS PSVPLFSTAA SSGFANTTTA AAQLPCFSNG  420
KLPYQHSPSL ANMNFAHYYC RS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400048524
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2468790.0FM246879.2 Solanum tuberosum subsp. andigena mRNA for relative to APETALA2 1 (rap1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086400.10.0ethylene-responsive transcription factor RAP2-7-like
RefseqXP_015086406.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK032e-93RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLM1CP810.0M1CP81_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000717320.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.13e-95related to AP2.7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]