PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 167aa MW: 18585.7 Da PI: 8.4252 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.5 | 6.6e-08 | 129 | 157 | 1 | 31 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krf 31 s+y+GV++++++grW+++I+ ++ k+f PGSC0003DMP400048521 129 SQYRGVTFYRRTGRWESHIWSVY----FlqKKF 157 78*****************9942....123555 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
METVTASGKL KELSFGQIEN SGTSNSSIVN VETSSTAGDD EFISCSDQRT DGYAFEILRA 60 DYEGNGFVTK ELFPLTGGES AAPPSQQQQW LDLSGNYSDV PMEQRIVLGP PQLRQQVKKS 120 RRGPRSRSSQ YRGVTFYRRT GRWESHIWSV YFLQKKFPIT VVFGLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048521 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240057 | 0.0 | AC240057.1 Solanum tuberosum cultivar RH89-039-16 chromosome 9 clone RH186C17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086400.1 | 1e-88 | ethylene-responsive transcription factor RAP2-7-like | ||||
Refseq | XP_015086406.1 | 1e-88 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | Q9LVG2 | 6e-24 | TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2 | ||||
TrEMBL | M1CP77 | 1e-119 | M1CP77_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400071732 | 1e-102 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60120.2 | 6e-19 | target of early activation tagged (EAT) 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048521 |
Publications ? help Back to Top | |||
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