PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048214 | ||||||||
Common Name | LOC102605444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25544.1 Da PI: 8.3985 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.5 | 1.4e-14 | 46 | 92 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRRdriN +++Lr+l+P++ +K++Ka+ L +v+++k+L PGSC0003DMP400048214 46 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAALLGSVVDHVKDL 92 78*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-14 | 40 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.90E-11 | 41 | 93 | No hit | No description |
PROSITE profile | PS50888 | 16.355 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-12 | 46 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-15 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-13 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 9.80E-6 | 131 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MENSFCSEYW PENQDSVYLL PQVPCYFPQI QCSHESFQER RESASRSHSE AEKRRRDRIN 60 AQLSTLRKLI PTSEKMDKAA LLGSVVDHVK DLKGKTAEIS KVLNTPTDTD EVTIEHLNEE 120 EENKGCLLKA SFCCDDRPEL FSELQRGIKN LKLRVMGADI TSLGGRIKGV FMLCPNENSA 180 NDVCMNSLKR SLRVVLSRIA ISPSTSNYRI KSKRQRFFLP AHFS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 215 | KSKRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048214 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356465.1 | 1e-167 | PREDICTED: transcription factor bHLH51-like | ||||
Swissprot | Q9XEF0 | 4e-46 | BH051_ARATH; Transcription factor bHLH51 | ||||
TrEMBL | M1CNH4 | 1e-166 | M1CNH4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400071293 | 1e-166 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5820 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 6e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048214 |
Entrez Gene | 102605444 |
Publications ? help Back to Top | |||
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