PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400048106 | ||||||||
Common Name | LOC107058871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LBD | ||||||||
Protein Properties | Length: 135aa MW: 15074.8 Da PI: 4.6556 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45 | 3.1e-14 | 5 | 60 | 44 | 99 |
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++ +++p ++reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l+++l+++ + PGSC0003DMP400048106 5 NFQQEIPMDNREDAVISMVYEATARLRDPVYGSVGIISALQKHIFHLQSNLNEASA 60 6779999******************************************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.429 | 1 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-13 | 6 | 58 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MVDINFQQEI PMDNREDAVI SMVYEATARL RDPVYGSVGI ISALQKHIFH LQSNLNEASA 60 EAMSLRTQLS NASTSLPSSL LEVSPFTPVN HEFHHSQKSS QQNAYSNNDL HLLLPEAADY 120 CFQETDQVLR PLPY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400048106 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 1e-178 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160565.1 | 2e-95 | PREDICTED: LOB domain-containing protein 1-like | ||||
TrEMBL | M1CN84 | 5e-94 | M1CN84_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400071132 | 9e-95 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13147 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-18 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400048106 |
Entrez Gene | 107058871 |
Publications ? help Back to Top | |||
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