PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400047996

Common Name

LOC102582552

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 350aa MW: 38774.9 Da PI: 6.2941

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400047996	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2.1e-10	150	206	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A+rs +RK +i eLe+kv++L++e ++L +l + + ++ PGSC0003DMP400047996 150 KRAKRILANRQSASRSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTQFTN 206 9*****************************************999877766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-16	146	210	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	148	211	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.8E-8	150	196	No hit	No description
SuperFamily	SSF57959	1.69E-10	150	201	No hit	No description
Pfam	PF00170	1.0E-8	150	198	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.17E-22	151	200	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MQDPSNPNSK QLNQTPPFSA TFRPSHHRRA HSEVNFRLPE DLDLVSDPFD ASAGSFEEIG 60 SEDDFFSTYM DIEKLGSGSN PTDVPGFNNA GAGSSGLVAD CGDGERNFTR PRHRHSNSVD 120 SSSLLLSESI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SASRSKERKA RYITELERKV 180 QTLQTEATTL SAQLTLFQRD TTQFTNENTE LKLRLQAMAQ QAQLRDALNE ALKQEVERLK 240 MATGEMSSSD AYNLGMQHIP YNQSAFFSHQ PQSGPSESQN IQMQQFHSLQ DSLLNPHRRL 300 LAGHGQVLQD TMQQDPLGRF QGLDIGGRGM HLVKTETPSI SASESSSTL*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MQDPSNPNSK QLNQTPPFSA TFRPSHHRRA HSEVNFRLPE DLDLVSDPFD ASAGSFEEIG  60
SEDDFFSTYM DIEKLGSGSN PTDVPGFNNA GAGSSGLVAD CGDGERNFTR PRHRHSNSVD  120
SSSLLLSESI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SASRSKERKA RYITELERKV  180
QTLQTEATTL SAQLTLFQRD TTQFTNENTE LKLRLQAMAQ QAQLRDALNE ALKQEVERLK  240
MATGEMSSSD AYNLGMQHIP YNQSAFFSHQ PQSGPSESQN IQMQQFHSLQ DSLLNPHRRL  300
LAGHGQVLQD TMQQDPLGRF QGLDIGGRGM HLVKTETPSI SASESSSTL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400047996

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006357296.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	1e-117	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	M1CN16	0.0	M1CN16_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400070968	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	5e-99	bZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400047996
Entrez Gene	102582552

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]