PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400047957 | ||||||||
Common Name | LOC107062572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29823.5 Da PI: 7.5479 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++ + +W+ ++ g+ Rt+k+c++rw +yl PGSC0003DMP400047957 19 KGAWSPQEDKKLIDYIAKYRNWNWSQMPKFAGLSRTGKSCRLRWTNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.9e-14 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE + ++ + lG++ W++Ia++++ gRt++++k++++++l PGSC0003DMP400047957 72 RGPFSLEETQTVIRMYQSLGSR-WSAIAKELP-GRTDNEIKNFYHTHL 117 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.235 | 14 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-21 | 17 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.35E-27 | 18 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.77E-9 | 21 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 70 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.706 | 71 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 9.6E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-13 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.59E-9 | 74 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGEVVFQLQR GKNMDCVKKG AWSPQEDKKL IDYIAKYRNW NWSQMPKFAG LSRTGKSCRL 60 RWTNYLRPDL KRGPFSLEET QTVIRMYQSL GSRWSAIAKE LPGRTDNEIK NFYHTHLKKH 120 LGGTKVEVKH KARSKKVEKV KQIEMSTQKK PLITTCPNIE GPNDQSLDFT NSSSSSSYIT 180 FDENYEILET SNQDNDVTSI VNQVYDDENI VILESNPDST TTSSSSVDLN VKDFMDVSVH 240 SSNVVDFWLE LYMAAENLNT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 19 | 119 | 7 | 106 | B-MYB |
1h8a_C | 6e-22 | 19 | 119 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400047957 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-128 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168845.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9S9Z2 | 5e-46 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | M1CMY6 | 0.0 | M1CMY6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070912 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 7e-48 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400047957 |
Entrez Gene | 107062572 |
Publications ? help Back to Top | |||
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