PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400047727

Common Name

LOC102592836

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 353aa MW: 40568.4 Da PI: 4.4164

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400047727	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40	1e-12	110	195	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e +L+e+ e+ +l+r++l++ +W ev++k+ + g+ ++ +C++ ++ l+k+ykk+ + ++k + +s++ +f++++ PGSC0003DMP400047727 110 WSEEESFVLLEVWGERYLELGRRSLRAEDWGEVAEKVtEMIGVDKTEAECRNQLDVLKKKYKKEITKMEKTGGGFHSKWTFFKKMD 195 ***********************************5568******************99999988899999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-18	109	197	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MNDSDDETPY PSRPNAAIYT SSLRSRRSIR NPTSYPRNTH YGYNNNEFQY NHHGAAGAAA 60 ADESDDEEEN QEFSSGENDV DNFQGKRKRK LETLVSNYNF APRPGSKEIW SEEESFVLLE 120 VWGERYLELG RRSLRAEDWG EVAEKVTEMI GVDKTEAECR NQLDVLKKKY KKEITKMEKT 180 GGGFHSKWTF FKKMDMLMNL RMKGHCGLGC GLDSGEYVFM DPRMYLDRSN VLDEMRDSPA 240 GSDADNDEEE EEQGSGGWEG DDASAKLLAD SIQRFGQIYE KIENSKRKQM MELEKMRRDF 300 QRELELQKKQ IVERAQLEIA KIRDDGENDD DEDNEDEDGE DTDNISGEKL RG*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MNDSDDETPY PSRPNAAIYT SSLRSRRSIR NPTSYPRNTH YGYNNNEFQY NHHGAAGAAA  60
ADESDDEEEN QEFSSGENDV DNFQGKRKRK LETLVSNYNF APRPGSKEIW SEEESFVLLE  120
VWGERYLELG RRSLRAEDWG EVAEKVTEMI GVDKTEAECR NQLDVLKKKY KKEITKMEKT  180
GGGFHSKWTF FKKMDMLMNL RMKGHCGLGC GLDSGEYVFM DPRMYLDRSN VLDEMRDSPA  240
GSDADNDEEE EEQGSGGWEG DDASAKLLAD SIQRFGQIYE KIENSKRKQM MELEKMRRDF  300
QRELELQKKQ IVERAQLEIA KIRDDGENDD DEDNEDEDGE DTDNISGEKL RG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400047727

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006338157.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	M1CME4	0.0	M1CME4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400070593	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12060	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-75	Trihelix family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400047727
Entrez Gene	102592836

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]