PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047694
Common NameLOC102587763
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 486aa    MW: 53908.4 Da    PI: 5.6819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047694genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-133986148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W + Ed +l d+v+++G g+W+++ r+ g+ R++k+c++rw ++l
  PGSC0003DMP400047694 39 KGPWIKAEDAILMDYVAKYGEGNWSSVHRRTGLARCGKSCRLRWANHL 86
                          799*****************************************9986 PP
2Myb_DNA-binding49.97.1e-1692135146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T+eE+el+++ +++ G++ W++ a++++ gRt++++k++w++
  PGSC0003DMP400047694  92 KGAFTQEEEELIIEMHAKIGNK-WARMAAEFP-GRTDNDIKNFWNT 135
                           799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1733486IPR017930Myb domain
SuperFamilySSF466894.69E-2836133IPR009057Homeodomain-like
SMARTSM007175.0E-103888IPR001005SANT/Myb domain
PfamPF002495.3E-123986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-234093IPR009057Homeodomain-like
CDDcd001679.84E-94186No hitNo description
PROSITE profilePS5129424.93687141IPR017930Myb domain
SMARTSM007175.8E-1691139IPR001005SANT/Myb domain
PfamPF002491.0E-1492135IPR001005SANT/Myb domain
CDDcd001672.32E-1194137No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2594140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MCMTTECVDR MTSEVGIDST SVKEANAGRN IREGSPLKKG PWIKAEDAIL MDYVAKYGEG  60
NWSSVHRRTG LARCGKSCRL RWANHLKPDL KKGAFTQEEE ELIIEMHAKI GNKWARMAAE  120
FPGRTDNDIK NFWNTRLKRQ RRAEKHMLPL GVFFQEFSED KQNKELATSS SANSDPHLLP  180
INNVEIPTAE NRNFEPSQQL YPPGLLNIGF SSFLDTPATS LRDQGLNSSW NTHSVRSTVH  240
SSKRIRGSEA WFSDQNVDLS QAHHQYQNDG SLFTQSLGFS SLYTRNLTSN YHPSSAGDIP  300
GIHASSSEPK LKGKLELPSF QTPMTSWDSP SSVPSIESSN TFIQSPPNEY TDSYSLSPQS  360
SDLLHAILYG SQTPNASRNN SHQETSRDAG PDSCPVLQEI QWGTNPDAIT PSGHTITSVF  420
SEYTPSSGGS LEDHQSIAPL MGCNINQEMA NFTPTAGNDD TSNHDLFSET DMYFSSTDWA  480
HDKME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28371405107B-MYB
1h8a_C2e-283714025127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047694
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340345.10.0PREDICTED: transcription factor GAMYB-like isoform X1
TrEMBLM1CMB70.0M1CMB7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000705490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-57myb domain protein 33
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]