PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047335
Common NameLOC102584288
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 218aa    MW: 24360.7 Da    PI: 4.5908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047335genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19e-1544131197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffk+ ++++++k++   +p++f++ehg +   +  + le ++g +W++kl   ++sg+++l +GW++F +   +  g f++F+++g+s+
  PGSC0003DMP400047335  44 FFKIILSPHASKLH---IPNEFVTEHGAN--LGDIVLLEVPNGVVWKIKL--LNSSGMVWLNEGWNKFKEYYSIACGYFLLFRYKGNSQ 125
                           78888788887766...*********977..776888999**********..**********************************999 PP

                           E..EEEEE CS
                    B3  90 felvvkvf 97 
                           f   v +f
  PGSC0003DMP400047335 126 F--SVFIF 131
                           9..55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2141134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.42141134IPR003340B3 DNA binding domain
SuperFamilySSF1019361.51E-2341141IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-1742132No hitNo description
SMARTSM010191.1E-1144134IPR003340B3 DNA binding domain
PfamPF023622.6E-1244130IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVDRREEHPA ETAARPEKQP AGMANRQGQG EPKPVDIPEI TPHFFKIILS PHASKLHIPN  60
EFVTEHGANL GDIVLLEVPN GVVWKIKLLN SSGMVWLNEG WNKFKEYYSI ACGYFLLFRY  120
KGNSQFSVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVPP EENGINLTPP GEPPKENRIN  180
LTPPDDPPEE DVIYLPPPGI YTMEELSLSS MPSRPKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047335
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165418.11e-159PREDICTED: B3 domain-containing protein At3g18960-like isoform X1
TrEMBLM1CLL61e-157M1CLL6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000700341e-157(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-25B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]