PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047318
Common NameLOC102590000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 320aa    MW: 35010.4 Da    PI: 6.5577
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047318genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.41.4e-324296155
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                          kprlrWt +LHerF++av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  PGSC0003DMP400047318 42 KPRLRWTADLHERFIDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 96
                          79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-313997IPR009057Homeodomain-like
PROSITE profilePS5129410.8913999IPR017930Myb domain
TIGRFAMsTIGR015571.1E-234297IPR006447Myb domain, plants
SuperFamilySSF466895.55E-164298IPR009057Homeodomain-like
PfamPF002496.3E-84495IPR001005SANT/Myb domain
PfamPF143791.8E-16140185IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MFPRLIQSQE DEFIHGCDVN VGIHHHNRVN GDPCLVLTSD PKPRLRWTAD LHERFIDAVT  60
QLGGPSKATP KAIMRTMGVK GLTLFHLKSH LQKYRLGKQS QKDLDEASKD GLTATYSLES  120
PCSGGTPQQL PASDLNEGFE VKEALRAQME VQSKLHLQVE AEKHLQIRQD AEQRYITMLE  180
KACKMLADQF IGDVVTENYQ ETYQGLNTKT QLSPLCNPHG LCPSESADFV GVHGPEVVSP  240
RIHPQRTDCS TESCLTSHES PAGFPLEGSS PGGKKRGLSG DSTHASYVWG EADMRSSGVH  300
VLPVNCFGIT GSNVQNVSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-184298157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047318
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350229.10.0PREDICTED: uncharacterized protein LOC102590000 isoform X1
TrEMBLM1CLK60.0M1CLK6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000700130.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97642027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.18e-69G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]