PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400047318 | ||||||||
Common Name | LOC102590000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 320aa MW: 35010.4 Da PI: 6.5577 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.4 | 1.4e-32 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerF++av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl PGSC0003DMP400047318 42 KPRLRWTADLHERFIDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-31 | 39 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.891 | 39 | 99 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-23 | 42 | 97 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.55E-16 | 42 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.3E-8 | 44 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-16 | 140 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 320 aa Download sequence Send to blast |
MFPRLIQSQE DEFIHGCDVN VGIHHHNRVN GDPCLVLTSD PKPRLRWTAD LHERFIDAVT 60 QLGGPSKATP KAIMRTMGVK GLTLFHLKSH LQKYRLGKQS QKDLDEASKD GLTATYSLES 120 PCSGGTPQQL PASDLNEGFE VKEALRAQME VQSKLHLQVE AEKHLQIRQD AEQRYITMLE 180 KACKMLADQF IGDVVTENYQ ETYQGLNTKT QLSPLCNPHG LCPSESADFV GVHGPEVVSP 240 RIHPQRTDCS TESCLTSHES PAGFPLEGSS PGGKKRGLSG DSTHASYVWG EADMRSSGVH 300 VLPVNCFGIT GSNVQNVSN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-18 | 42 | 98 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400047318 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350229.1 | 0.0 | PREDICTED: uncharacterized protein LOC102590000 isoform X1 | ||||
TrEMBL | M1CLK6 | 0.0 | M1CLK6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070013 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9764 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13640.1 | 8e-69 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400047318 |
Entrez Gene | 102590000 |
Publications ? help Back to Top | |||
---|---|---|---|
|