PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400047280 | ||||||||
Common Name | LOC102587080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 27300.9 Da PI: 9.2027 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ll+++v+++G g+W+++ar g++R +k+c++rw +yl PGSC0003DMP400047280 13 KGPWTVEEDKLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg T+ E+ +++++++ +G++ W+tIar ++ gRt++++k++w++ PGSC0003DMP400047280 66 RGQITPYEERIILELHAIWGNR-WSTIARSLP-GRTDNEIKNYWRT 109 6788999***************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.079 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-17 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-18 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-24 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-11 | 15 | 60 | No hit | No description |
SMART | SM00717 | 3.1E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.619 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.0E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-23 | 68 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.19E-8 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGRWGIIEEE WRKGPWTVEE DKLLIEYVNL HGEGRWNSVA RLAGLKRNGK SCRLRWVNYL 60 RPDLKRGQIT PYEERIILEL HAIWGNRWST IARSLPGRTD NEIKNYWRTN FKKKFKKSST 120 ENSEKTKVHF LKRKQFQQQQ LLNSQIDMKK IMSLFEENEN KVPSHVPKQE DMTILYQNNT 180 FHEQEQGGFF YSMINGYANY VPVPEASSND EDIMWDIGLW NLDDFNVNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-28 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400047280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975517 | 1e-124 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355751.1 | 1e-170 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | M1CLG8 | 1e-169 | M1CLG8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069955 | 1e-170 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-70 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400047280 |
Entrez Gene | 102587080 |
Publications ? help Back to Top | |||
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