PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047253
Common NameLOC102591034
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 375aa    MW: 40664.7 Da    PI: 6.7271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047253genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.3e-164792147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          + +W++eEd +l ++v+++G ++W+ Ia+ +  gR++k+c++rw + 
  PGSC0003DMP400047253 47 KEPWSPEEDGILTELVNKFGARNWSMIAQGIA-GRSGKSCRLRWCNQ 92
                          679*****************************.***********985 PP
2Myb_DNA-binding574.5e-1899143147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  PGSC0003DMP400047253  99 RKPFTDEEDHIIINAHAVHGNK-WAAIAKLLP-GRTDNAIKNHWNST 143
                           789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2644293IPR017930Myb domain
SuperFamilySSF466891.33E-3044140IPR009057Homeodomain-like
SMARTSM007174.1E-134695IPR001005SANT/Myb domain
PfamPF002491.2E-144792IPR001005SANT/Myb domain
CDDcd001672.55E-134991No hitNo description
Gene3DG3DSA:1.10.10.602.9E-2549100IPR009057Homeodomain-like
PROSITE profilePS5129425.71594148IPR017930Myb domain
SMARTSM007177.8E-1698146IPR001005SANT/Myb domain
PfamPF002494.2E-1699143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-24101147IPR009057Homeodomain-like
CDDcd001674.27E-12101144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNEKTEQNGY AAAGDGDGGD GGCTLVDAGD AMLHGGRGST VSSGRVKEPW SPEEDGILTE  60
LVNKFGARNW SMIAQGIAGR SGKSCRLRWC NQLDPVLKRK PFTDEEDHII INAHAVHGNK  120
WAAIAKLLPG RTDNAIKNHW NSTLRRRFAG LWRVKPVCSM MLDDSSIYKA RALSEETMSR  180
EDVNQIKPLE MQEVSRTECM TSQSEDKDQI YGTCGIPEKT PHFAFERSRP TSMGNSDPPA  240
SHPTEKIGAF NVYNPSVTSR IVPMQGPLIH TFSPDFDICK LLEGVSGETI VPQGCGHGCC  300
AATTKSTSKS SLLGPEFVDY EEHPPLLSHE LASMATDLNN IAWIKSGLEK AGKLSSLATS  360
QRNSQRSSAQ VGFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-39461476107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355677.10.0PREDICTED: myb-related protein B
TrEMBLM1CLE10.0M1CLE1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000699210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.16e-90myb domain protein 109
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]