PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400047119 | ||||||||
Common Name | LOC102583764 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28943.6 Da PI: 9.0322 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.7e-07 | 25 | 65 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41 WT+eE +++ a + + +W+++a+ ++ g++ +++ PGSC0003DMP400047119 25 EWTKEENKRFESALAIYDETtpnRWSKVAEIIP-GKSVLDVI 65 6*****************99*************.**988876 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3.2e-13 | 123 | 167 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky PGSC0003DMP400047119 123 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 167 8*****************************789***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-4 | 18 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.223 | 21 | 75 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-9 | 22 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-11 | 24 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-6 | 25 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.84E-7 | 25 | 72 | No hit | No description |
PROSITE profile | PS51294 | 20.287 | 116 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-16 | 117 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-18 | 119 | 171 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-11 | 120 | 170 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 122 | 167 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-11 | 123 | 167 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.15E-9 | 123 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
METLYPTSFV PNSNWIMQQS KSNTEWTKEE NKRFESALAI YDETTPNRWS KVAEIIPGKS 60 VLDVIMQYKE LVADVSDIEA GLPPNTKRGF TSSFALEFVD HCKIQTFSKR GKSYDHKRKR 120 GVPWTEEEHR RFLMGLEKYG KGDWRNISRN FVISKTPTQV ASHAQKYYLR QLSREKERKR 180 PSIHDITTVH LTNDEFLNNN NNNNNKKSMC EERLYMSSLH RSTSTTDVLI GCWNNSIDED 240 LMAFGQFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400047119 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-177 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 1e-177 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355655.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_015167947.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_015167948.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-78 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M1CL29 | 0.0 | M1CL29_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069753 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-75 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400047119 |
Entrez Gene | 102583764 |
Publications ? help Back to Top | |||
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