PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047100
Common NameLOC102578564
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 410aa    MW: 46124 Da    PI: 4.3805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047100genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-2081131155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr++  +g+WvAeIr+p     +  +r +lg+f+ta eAa a+++a+++++g
  PGSC0003DMP400047100  81 CKYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAIEAALAYDEAARAMYG 131
                           79*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.92E-3181137No hitNo description
PfamPF008471.4E-1481131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-3082138IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2082139IPR016177DNA-binding domain
SMARTSM003804.1E-3382145IPR001471AP2/ERF domain
PROSITE profilePS5103220.75882139IPR001471AP2/ERF domain
PRINTSPR003679.2E-108394IPR001471AP2/ERF domain
PRINTSPR003679.2E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAVLDQTSNM MLPMDYTRKK KSRSRKDAPK NVADTLAKWK EVNEKLDACD DDGRKPVRKV  60
PAKGSKKGCM KGKGGPDNGR CKYRGVRQRT WGKWVAEIRE PHRGRRLWLG TFDTAIEAAL  120
AYDEAARAMY GPCARLNLLD YYPSSKESSK DDSSLPTESH SDSNTASSFS EVCPADDMMR  180
GRANVPEIRY EDGASEIKFD GTRTGSNKVG TPLSSLREEA KDEAKEVLDK SETFTPLRSL  240
REEAEDKAKE VLDKSETFEI KEEPVACSYD SWDIGQEDLG NLCLDDEMFD VNELLGMMDS  300
TPLDASAPSQ DVGFVPPKQE QYAYDPSYRL QNAAYDNNQL SNPSYQLENA DDQFSNPYQL  360
DNADVNTLEG LQQMEQQPPI EIDYDFDFLR PGRQEDFNFC LDDLGVLDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1583138359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-1572138571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355639.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
RefseqXP_015167944.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM1CL100.0M1CL10_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000697330.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.14e-35DRE-binding protein 2A
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]