PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400047028
Common NameLOC102586930
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 316aa    MW: 36246.5 Da    PI: 7.4236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400047028genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  PGSC0003DMP400047028 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                          678*******************************************97 PP
2Myb_DNA-binding44.92.8e-1467111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg +++eE++ ++ ++k  G++ W+ Ia++++ gRt++++k++w++ 
  PGSC0003DMP400047028  67 RGMFSQEEEDMIITLHKVVGNR-WAQIAAKLP-GRTDNEIKNFWNSN 111
                           788*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23964IPR009057Homeodomain-like
PROSITE profilePS5129417.25961IPR017930Myb domain
SuperFamilySSF466896.36E-2913108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002498.3E-151461IPR001005SANT/Myb domain
CDDcd001671.82E-101761No hitNo description
PROSITE profilePS5129423.82862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2565117IPR009057Homeodomain-like
SMARTSM007172.8E-1466114IPR001005SANT/Myb domain
PfamPF002494.9E-1367111IPR001005SANT/Myb domain
CDDcd001671.03E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRHSVFVKE KTRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDMIIT LHKVVGNRWA QIAAKLPGRT DNEIKNFWNS NLKKKLIKQG  120
IDPNTHKPLS ENHQVRNETN YTDKASSLLP NMSNSAEIEQ PFHFNSKRSF NSEAITRQLT  180
EVSRNQLVSK QVFDPLFLYE FQANVNPIGP YVHHHNQIEG NQDFGFCSNF QHGHMTTESD  240
ISDSSTSRMS TSNSSNTMIS HYSSAGIQIN EMLEWDADNK IDSLIQYPYV GIKNEENFSN  300
NNPLSGENLD VFHHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400047028
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347432.10.0PREDICTED: transcription factor MYB86-like
TrEMBLM1CKU40.0M1CKU4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000696440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-76myb domain protein 86
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]