PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 482aa MW: 54422.2 Da PI: 4.9608 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.1 | 1.9e-35 | 14 | 106 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d+++++++sws+++nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+Yg+kkv+ + weF+++ F +g+ PGSC0003DMP400046951 14 FLSKTYDMVDDRSTDTVVSWSKSNNSFVVWNVPEFSRDILPKYFKHNNFSSFVRQLNTYGYKKVDPDC---------WEFANEGFLRGQ 93 9***************************************************************9987.........************ PP XXXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkkse 103 k+ll++i r+k + PGSC0003DMP400046951 94 KHLLKTISRRKPS 106 **********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 6.12E-34 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-59 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.6E-37 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 5.9E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.5E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.9E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MEGVHEIGNS LPPFLSKTYD MVDDRSTDTV VSWSKSNNSF VVWNVPEFSR DILPKYFKHN 60 NFSSFVRQLN TYGYKKVDPD CWEFANEGFL RGQKHLLKTI SRRKPSQMQV HQETASQVQS 120 LSVGSCVEVG KIGIEEEVER LKIDKSIHME ELVNLRQQQK ATDHRLENVG QRLQLMEQRE 180 QQAMTFLAKA LQSPGFIAEL VHQQNEGKRR IPGMNKKRRF PNQEEENYAA KQVSTLRDRQ 240 IVRYQPLMNE AAKALLQKLL KTNTSGRLET IVKNTHGFLT NRARSFENTL ETGGISPHIS 300 EVTLSQLATS SQSHLMSDSG FPFNSSLSVI PEIQYSPSLV PGQAKVPQFP ELNALNSQTD 360 HVNPEFSGHG FNTPETLEIT DLKQPETGDM PYIETMQDIV DDVASIVPDG FSMDDVFLDE 420 MPKLPGINDI FWDQILLASP LTGDKDEIGS LALEDGLAKE EDVPEVQESD CEELKRMSHL 480 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-24 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-24 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-24 | 9 | 103 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046951 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC211039 | 0.0 | AC211039.2 Solanum lycopersicum chromosome 6 clone C06HBa0084A18, complete sequence. | |||
GenBank | AC219227 | 0.0 | AC219227.1 Solanum lycopersicum chromosome 6 clone C06SLm0113N10, complete sequence. | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347336.1 | 0.0 | PREDICTED: heat stress transcription factor A-1b-like | ||||
Swissprot | O81821 | 1e-128 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | M1CKN3 | 0.0 | M1CKN3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069550 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-105 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046951 |
Publications ? help Back to Top | |||
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