PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046935 | ||||||||
Common Name | LOC102580730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WOX | ||||||||
Protein Properties | Length: 246aa MW: 26708.6 Da PI: 5.7223 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.4 | 3.9e-16 | 19 | 79 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p+++e ++ k l + +++V++WFqNrR + ++ PGSC0003DMP400046935 19 RSRWNPKPEQIVILESIFNSgMVNPQKDETVRIRKMLeqfgAVGDANVFYWFQNRRSRSRR 79 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 108.3 | 4.6e-35 | 18 | 81 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q PGSC0003DMP400046935 18 VRSRWNPKPEQIVILESIFNSGMVNPQKDETVRIRKMLEQFGAVGDANVFYWFQNRRSRSRRRQ 81 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-14 | 14 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.386 | 15 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-9 | 16 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.6E-5 | 17 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-14 | 19 | 79 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDDDSSSSNQ SCERNETVRS RWNPKPEQIV ILESIFNSGM VNPQKDETVR IRKMLEQFGA 60 VGDANVFYWF QNRRSRSRRR QRQIQASLSA ASNSNEEQSA RSSSSGAIQF QTNFVPSSVS 120 SSLGGVVGNA NDGLFLFSGP MEIDQNSSIT SILCSPTDNS NLNCSSSGFI TVFINGVATQ 180 VPRGPLDMKA MFGPEDLVLY HSSGVPLPVN ENGFVVQGLQ HGESYFLVSS HQLPQVAGGR 240 VSNMT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046935 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164268.1 | 1e-180 | PREDICTED: WUSCHEL-related homeobox 11-like isoform X1 | ||||
Swissprot | Q6X7J3 | 8e-63 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | M1CKL8 | 1e-178 | M1CKL8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069529 | 1e-179 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 2e-32 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046935 |
Entrez Gene | 102580730 |
Publications ? help Back to Top | |||
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