PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046911 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | FAR1 | ||||||||
Protein Properties | Length: 218aa MW: 24863 Da PI: 9.8917 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.1 | 3.8e-20 | 51 | 136 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C +++ + ++++r +r gC+a++ vk+ek g+w+v k++ +HnH+l+ PGSC0003DMP400046911 51 YYDEYAGMTGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRPA---SLANQKRDRQRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 136 8*********************************8655555554...458999999*******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-18 | 51 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDVQVLEDNG ARRVESSAEG QVSTSEADRS HRTQEPNEGM TFESEEAARA YYDEYAGMTG 60 FITRVLSSRK SERDGSIISR GLGCRGIPDN QRPASLANQK RDRQRDGCTA MILVKREKPG 120 TWVVRKFVRD HNHPLVMSPS KRRPTFDEKD KRIQELTAEL RIKKRLTAAY REHLLSLMKD 180 VESHSEHLST KVQAVQSILI ELEAKRQELS NHSRHHK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046911 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975518 | 0.0 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347300.1 | 1e-161 | PREDICTED: protein FAR1-RELATED SEQUENCE 2-like | ||||
TrEMBL | M1CKJ4 | 1e-159 | M1CKJ4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069493 | 1e-160 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-45 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046911 |
Publications ? help Back to Top | |||
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