PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22335.8 Da PI: 10.0774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.8 | 3.5e-09 | 7 | 137 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikev.d...iykvePwdLpkkvkaeekew...yfFskrdkkyatgkrknratksgyWkatgkd 89 hP d+e++ + L k v gk+++ ++++ +v d i + P+++ +++k++++++ F +r++ + ++ + g+Wk+t k PGSC0003DMP400046613 7 HPMDKEMM-KNLVKYVIGKPFPRKHTVMDVdDvygIRVFSPSQILESTKGTNNNTrllITFQNRENC---KIFDSK-EAPGFWKSTPKL 90 8******9.5688999999977766555553422266779***975444444433112444444333...333444.356********* PP NAM 90 kevlskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128 k +++++++++g k+ +y ++++++ +k++W + ey l PGSC0003DMP400046613 91 KGIFDANKRHIGNIKIGWYYyynvddgrDKSSSRLRKSEWQIREYYL 137 ******999**9999988877888855445566667*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 10.918 | 1 | 159 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-9 | 7 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGKSNDHPMD KEMMKNLVKY VIGKPFPRKH TVMDVDDVYG IRVFSPSQIL ESTKGTNNNT 60 RLLITFQNRE NCKIFDSKEA PGFWKSTPKL KGIFDANKRH IGNIKIGWYY YYNVDDGRDK 120 SSSRLRKSEW QIREYYLAPT YLPQSKVERK NVLLTMMIKA KAANNNDKSD DKMQIVLDKQ 180 EIMQSLQCLQ L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046613 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774642.1 | 1e-112 | uncharacterized protein LOC114078274 | ||||
TrEMBL | M1CJT3 | 1e-141 | M1CJT3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400069020 | 1e-141 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14078 | 5 | 10 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046613 |
Publications ? help Back to Top | |||
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