PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 522aa MW: 59686.5 Da PI: 7.3211 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 76.9 | 5.9e-24 | 100 | 234 | 1 | 128 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ 65 a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++a++ai +l +t PGSC0003DMP400046265 100 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAQRAINALEKTpfqvfsnkidstnkalnvrneegq 188 589**************************************************************887777655554444444444444 PP TCP 66 .........................................ssssaseceaesssssasnsssgkaaksaakskksqksaasalnlake 113 + PGSC0003DMP400046265 189 faleqswsvdkkteleelarhstklnatmqhsadqfpegcyK----------------------------------------------- 230 444444444444444443333333333333333322222221............................................... PP TCP 114 srakarararertre 128 ++++ PGSC0003DMP400046265 231 -----------EQSS 234 ...........2222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.9E-23 | 101 | 239 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.683 | 103 | 161 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MNHQLQVSNE NEDKSSSQQE DDDDENKDEF FHEILQSDYQ HLQQWPNYFT APSATLVPKH 60 QNNTQCPSHK DETKKVSLKR KPKRAKKDVM EVHGSRIVRA TGRKDRHSKV STATGPKDRR 120 VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKEAQRAINA LEKTPFQVFS NKIDSTNKAL 180 NVRNEEGQFA LEQSWSVDKK TELEELARHS TKLNATMQHS ADQFPEGCYK EQSSKVCQAN 240 ATQIVNSSAN GSKIQSFCEF QTHPQAHFHS QTKRQSPNDA KIQSFCEYQT HPQSHFQSET 300 KKQSPNVAKT QSFCELQTHP QAHFHSQTKK QPTNDAKIQS FWELQTHPQG HFQSETKNQS 360 PNVAKTQSFC ELQTYPQGQF HSETKRQSAK DAKIQSFCEL QTYPQGHFHS ETKNQSAQLG 420 NFFSFQSCHQ NESISFSGDH HHHGFNFSPQ NFPTVLGQNQ MFNYLREPLQ STSTFPQTIS 480 YSNNIGFAND GLLGLCTTPI TQQEEEDEQG SISTTLLHYQ D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 108 | 161 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 108 | 161 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046265 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443396.1 | 1e-85 | PREDICTED: transcription factor TCP3-like | ||||
TrEMBL | M1CJ41 | 0.0 | M1CJ41_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068478 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15569 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 4e-34 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046265 |
Publications ? help Back to Top | |||
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