PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400046264
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 455aa    MW: 52221.6 Da    PI: 8.797
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400046264genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP75.61.5e-231002341128
                   TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ 65 
                           a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++a++ai +l +t                        
  PGSC0003DMP400046264 100 ATGRKDRHSKVSTATGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAQRAINALEKTpfqvfsnkidstnkalnvrneegq 188
                           589**************************************************************887777655555555444444444 PP

                   TCP  66 .........................................ssssaseceaesssssasnsssgkaaksaakskksqksaasalnlake 113
                                                                    +                                               
  PGSC0003DMP400046264 189 faleqswsvdkkteleelarhstklnatmqhsadqfpegcyK----------------------------------------------- 230
                           444444444444444444444333333333333333333221............................................... PP

                   TCP 114 srakarararertre 128
                                      ++++
  PGSC0003DMP400046264 231 -----------EQSS 234
                           ...........2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-22101239IPR005333Transcription factor, TCP
PROSITE profilePS5136927.683103161IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MNHQLQVSNE NEDKSSSQQE DDDDENKDEF FHEILQSDYQ HLQQWPNYFT APSATLVPKH  60
QNNTQCPSHK DETKKVSLKR KPKRAKKDVM EVHGSRIVRA TGRKDRHSKV STATGPKDRR  120
VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKEAQRAINA LEKTPFQVFS NKIDSTNKAL  180
NVRNEEGQFA LEQSWSVDKK TELEELARHS TKLNATMQHS ADQFPEGCYK EQSSKVCQAN  240
ATQIVNSSAN GSKIQSFCEF QTHPQAHFHS QTKRQSPNDA KIQSFCEYQT HPQSHFQSET  300
KKQSPNVAKT QSFCELQTHP QAHFHSQTKK QPTNDAKIQS FWELQTHPQG HFQSETKNQS  360
PNVAKTQSFC ELQTYPQGQF HSETKRQSAK DAKIQSFCEL QTYPQGQFHS ETKRQSAKDA  420
KIQSFCELQT YPQGQFHSET KRQSAKGCQD SIFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-17108161154Putative transcription factor PCF6
5zkt_B3e-17108161154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400046264
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443396.18e-87PREDICTED: transcription factor TCP3-like
TrEMBLM1CJ400.0M1CJ40_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000684780.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.12e-34TCP domain protein 10
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]