PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400046169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 167aa MW: 18893.3 Da PI: 10.124 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.1 | 1.6e-30 | 34 | 125 | 2 | 66 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................... 65 g+kdrhsk+ T +g RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak++i++l+ + PGSC0003DMP400046169 34 FGGKDRHSKVLTVKGVRDRRVRLSVPTALQLYDLQDKLGLDQPSKVVDWLLNEAKHEIDQLPPLqmppirdqtglpltglrketmvvsd 122 689*************************************************************4444444444444333333332221 PP TCP 66 ..s 66 + PGSC0003DMP400046169 123 edT 125 110 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.123 | 36 | 94 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.7E-30 | 36 | 143 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MITREVDTSD NKIPKKSSWT SFKDPRIVRV SRAFGGKDRH SKVLTVKGVR DRRVRLSVPT 60 ALQLYDLQDK LGLDQPSKVV DWLLNEAKHE IDQLPPLQMP PIRDQTGLPL TGLRKETMVV 120 SDEDTVKLDA RNLDLKDNSN NNNNSNSFSF GLYQNNHSSQ SGIFKY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-20 | 41 | 95 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-20 | 41 | 95 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400046169 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246813 | 1e-161 | AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365661.1 | 1e-114 | PREDICTED: transcription factor TCP13-like | ||||
Swissprot | Q9S7W5 | 7e-41 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | M1CIV7 | 1e-117 | M1CIV7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068332 | 1e-113 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 6e-43 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400046169 |
Publications ? help Back to Top | |||
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