PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045958
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 219aa    MW: 24482.6 Da    PI: 4.7516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045958genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-183787155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          + y+GVr ++ +g+Wv+eIr p++   + r++lg++ t+e+Aa+a++ a+++++g
  PGSC0003DMP400045958 37 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTPEMAARAHDVAALSIKG 87
                          68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-133787IPR001471AP2/ERF domain
SMARTSM003801.5E-3638101IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-213896IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-313896IPR001471AP2/ERF domain
PROSITE profilePS5103223.2483895IPR001471AP2/ERF domain
CDDcd000183.43E-313995No hitNo description
PRINTSPR003674.6E-103950IPR001471AP2/ERF domain
PRINTSPR003674.6E-106177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAELVQSSPI SVSKTEEPEE KEKEKRMEKR RRDESYPVYR GVRMRSWGKW VSEIRQPRKK  60
SRIWLGTYPT PEMAARAHDV AALSIKGNSA ILNFPQLVES LPRPASISPR DVQAAAAKAA  120
AMDELNSSVS SSSTLSESME ETMTVAAASE DQLGQIIELP NLEGIFESEK MKLSDSGEGW  180
VYPPPWGEFE DEFCGYFFEH TAIGESLIPS KFETMKWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1739961573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045958
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258620.0JN125862.1 Solanum tuberosum dehydration-responsive element-binding protein DREB1 (DREB1) mRNA, complete cds.
GenBankJX4288030.0JX428803.1 Solanum tuberosum AP2 c4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305560.11e-158dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD34e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM1CIB91e-157M1CIB9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000680401e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]