PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045955
Common NameLOC102595935
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92364.9 Da    PI: 6.5931
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045955genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191674357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  PGSC0003DMP400045955 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74
                          5679*****************************************************97 PP
2START173.21.7e-541603672204
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + ++  
  PGSC0003DMP400045955 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAng 247
                           789*******************************************************.8888888888****************9999 PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l +++l+a+++l+p Rdf+ +Ry+    +g++v++++S+ ++ + p+    +++vRae+lpSg+li+p+++g+s v++v+h++l+
  PGSC0003DMP400045955 248 GTIELLYMQLYAPTTLAPpRDFWLLRYTTVTDDGSFVVCERSLGNTLNGPSmpqVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMNLE 336
                           ***********************************************999988889********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                           +++++++lr+l++s+++ ++kt++a+l++++
  PGSC0003DMP400045955 337 AWSVPEVLRPLYESSAVLAQKTTMAALRQLR 367
                           ***************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7421175IPR001356Homeobox domain
SuperFamilySSF466893.51E-171377IPR009057Homeodomain-like
SMARTSM003892.3E-161379IPR001356Homeobox domain
CDDcd000868.52E-171676No hitNo description
PfamPF000461.1E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-181874IPR009057Homeodomain-like
CDDcd146861.10E-568107No hitNo description
PROSITE profilePS5084826.784150365IPR002913START domain
CDDcd088752.67E-75154369No hitNo description
SMARTSM002341.1E-39159369IPR002913START domain
SuperFamilySSF559617.69E-37159367No hitNo description
Gene3DG3DSA:3.30.530.201.4E-24159365IPR023393START-like domain
PfamPF018527.8E-52160367IPR002913START domain
PfamPF086701.1E-50694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MSMSCKDGKS IEDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT  120
QTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGMAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN  240
MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYTTVTDD GSFVVCERSL GNTLNGPSMP  300
QVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTM  360
AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLNRGFN EALNGFSSEG WSMLDNDGMD  420
DVTILVNSSP DKLMGLNLSF SDGFTSLSNA ILCAKASMLL QSVTPAILLR FLREHRSEWV  480
DNNIDAYSAA AVKVGPCSLP GVRVSNFGGQ VILPLAHTVE HEELLEVIKL EGVCHSPEDV  540
IMPRDMFLLQ LCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL ETGPVGSKVA NDLKSTGGTS KSIMTIAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSNFGSV GGLRLPLGTP EAHTLARWIC QSYRRFLGVE LPKLSSEGSE  720
SILDSLWHHS DAIICCSAKA MPVFTFANQG GLDMLETTLV ALQDISLEKI FDEHGRKNLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE KAVAWKVLNE EDTAHCISFM FVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045955
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359469.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM1CIB60.0M1CIB6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000680370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]