PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400045753 | ||||||||
Common Name | LOC102603585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 173aa MW: 19308.6 Da PI: 4.6105 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 43.7 | 6.8e-14 | 23 | 118 | 7 | 97 |
NF-YB 7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 lP + v r++k+ l +++ is +d+ e + fi ++++ a+d c++ kr+tin++d++ al ++ f + +eplk+ l+ + PGSC0003DMP400045753 23 GLPKTIVRRVVKEKLSqlsTDTDISllRDSLLAFSESARLFIHYLSATANDICKESKRQTINAEDVFKALEEIEFPELIEPLKASLEGF 111 5777888888887654111566666446777888999**************************************************** PP NF-YB 91 relegek 97 re ++++ PGSC0003DMP400045753 112 REKNSKR 118 **88765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.0E-31 | 15 | 155 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.52E-24 | 23 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-8 | 24 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MAEIEKQKEK VVAEATVQID QEGLPKTIVR RVVKEKLSQL STDTDISLLR DSLLAFSESA 60 RLFIHYLSAT ANDICKESKR QTINAEDVFK ALEEIEFPEL IEPLKASLEG FREKNSKRKS 120 VSSKSPESNK KAKLKEPVEN GKGKMKEQPS DNENEDAQAG EEVNEVEDSV DD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y26_A | 2e-11 | 16 | 134 | 10 | 125 | DNA polymerase epsilon subunit D |
5y27_A | 2e-11 | 16 | 134 | 10 | 125 | DNA polymerase epsilon subunit D |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400045753 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC217004 | 7e-86 | AC217004.1 Solanum lycopersicum chromosome 11 clone C11HBa0303G16, complete sequence. | |||
GenBank | HG975523 | 7e-86 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362889.1 | 1e-119 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | M1CHV0 | 1e-118 | M1CHV0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067767 | 1e-119 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-30 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400045753 |
Entrez Gene | 102603585 |
Publications ? help Back to Top | |||
---|---|---|---|
|