PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29069.4 Da PI: 9.0193 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.8 | 4.7e-14 | 14 | 95 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +k+g l +p f+ ++ +g+ +++ + + g +W +k+ ++++ +++GW eFv+++gLk gD+++F+++g++ef v PGSC0003DMP400045681 14 I--QPGFKNG-LKIPIGFL-KYlKGN--DNVEHAILKRGGYKWPMKV--NGHR----FEAGWVEFVEQQGLKLGDILMFRHEGNMEF--EV 90 4..4556665.********.555666..567889999**********..7777....9************************99999..99 PP EEE-S CS B3 95 kvfrk 99 ++f++ PGSC0003DMP400045681 91 SIFDS 95 99986 PP | |||||||
2 | B3 | 33.8 | 5.9e-11 | 166 | 230 | 20 | 88 |
HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + f+ ++g+ + ++ +++l+de r W+v + + ++++ + +GW +F +ngL++gD F+l+++ PGSC0003DMP400045681 166 RAFL-SNGLMN-RKCEMVLKDEAQRCWSVWI--GRAGRHFGILRGWTKFRAENGLRVGDAYKFELIKNG 230 4454.445443.4459***************..9999999999*********************99853 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-20 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.069 | 7 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.46E-13 | 8 | 94 | No hit | No description |
SMART | SM01019 | 8.0E-15 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-11 | 18 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-15 | 149 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-14 | 149 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.6E-7 | 155 | 244 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.90E-9 | 161 | 239 | No hit | No description |
Pfam | PF02362 | 3.8E-9 | 166 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.729 | 179 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW PMKVNGHRFE 60 AGWVEFVEQQ GLKLGDILMF RHEGNMEFEV SIFDSTHCDR DYVEYMEEGG GGGGGDHTSE 120 EKFKFKDIMK KPSNMSLLNA QVVTSTSGDD HHPSFSSTVK PYCFTRAFLS NGLMNRKCEM 180 VLKDEAQRCW SVWIGRAGRH FGILRGWTKF RAENGLRVGD AYKFELIKNG EMPIAQFHCK 240 CSFSSNVVMY FCQD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045681 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-127 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009801949.1 | 1e-108 | PREDICTED: B3 domain-containing protein REM14-like | ||||
Refseq | XP_016464850.1 | 1e-108 | PREDICTED: B3 domain-containing protein REM14-like | ||||
TrEMBL | M1CHN8 | 0.0 | M1CHN8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067664 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-28 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045681 |
Publications ? help Back to Top | |||
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