PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045528
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 279aa    MW: 31160.8 Da    PI: 7.3837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045528genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20139189255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+  ++g
  PGSC0003DMP400045528 139 NYRGVRQRP-WGKYAAEIRDPRRRG--SRVWLGTFDTAIEAAKAYDKAAFTMRG 189
                           59*******.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-30138197No hitNo description
SMARTSM003802.8E-36139203IPR001471AP2/ERF domain
PfamPF008477.1E-14139189IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22139199IPR016177DNA-binding domain
PROSITE profilePS5103223.683139197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-32139198IPR001471AP2/ERF domain
PRINTSPR003671.4E-10140151IPR001471AP2/ERF domain
PRINTSPR003671.4E-10163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MESCNSESAS SDSLPFDFFF DIEADLFQFG TGVSNSSSES ANSVHNRTDF VKIESEPSIS  60
SSDYGENQSK CFQFKSEPQV FIDLTSPKSS SVSDRKPSLK IDLPPVKKYE WIDFGNSAHS  120
NPIVSVPVKQ IRKAEEKKNY RGVRQRPWGK YAAEIRDPRR RGSRVWLGTF DTAIEAAKAY  180
DKAAFTMRGS KAILNFPLEV GKTLSYSSSA VEGGVKRRRD SAEAEEEKVV KKYKEEESWP  240
LTPSSWNFVF EQNCNGIFNL PPLSPLSPHL GCSQLIQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-29138200163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045528
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107830.0AP010783.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0006F21, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359240.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ404787e-57ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLM1CHB70.0M1CHB7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000674720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-39ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]