PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400045418
Common NameLOC102586666
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 246aa    MW: 28426.7 Da    PI: 6.5107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400045418genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.8e-161461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT+eEd +l+ +++++G+ +W+  +++ g+ R++k+c++rw +yl
  PGSC0003DMP400045418 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWMNYL 61
                          799*******************************************97 PP
2Myb_DNA-binding58.71.3e-1867110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++
  PGSC0003DMP400045418  67 RGNYTKEEDEIILNLHAQLGNK-WSAIAVHLP-GRSDNEIKNHWHT 110
                           899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.899961IPR017930Myb domain
SuperFamilySSF466896.91E-3011108IPR009057Homeodomain-like
SMARTSM007177.9E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-231568IPR009057Homeodomain-like
CDDcd001679.40E-91661No hitNo description
PROSITE profilePS5129424.81662116IPR017930Myb domain
SMARTSM007178.1E-1766114IPR001005SANT/Myb domain
PfamPF002492.8E-1667110IPR001005SANT/Myb domain
CDDcd001673.14E-1169110No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRTPCRDEN GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWMNY  60
LSPNVKRGNY TKEEDEIILN LHAQLGNKWS AIAVHLPGRS DNEIKNHWHT ALKKRTNYNL  120
SEGSKKCNNK KSESNITKRK SNVENQNASA NNNMHENIVL ESSEWSPKES SSEELSSIDY  180
QQDIFQEELA ILEEITSGSF WTEPFEMDSK IDFVAPSIDY CGLVCPPSPF IPHEFFDFDD  240
CNNYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141177109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400045418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-171HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360585.10.0PREDICTED: transcription factor WER-like
TrEMBLM1CH280.0M1CH28_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-53myb domain protein 14
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]