PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400045417 | ||||||||
Common Name | LOC107063249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 28219.3 Da PI: 6.0972 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++l+ +++++G+ +W+ +++ g+ R++k+c++rw ++l PGSC0003DMP400045417 14 KGTWTLEEDKKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWINHL 61 799******************************************996 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEde+++++++qlG++ W+tIa++++ R+++++k++w++ PGSC0003DMP400045417 67 RGNYTKEEDEIILNLHAQLGNK-WSTIAAHLP-ERSDNEIKNHWHTT 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.859 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.86E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.019 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.51E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MVRTPCYDES GRKKGTWTLE EDKKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWINH 60 LRPNVKRGNY TKEEDEIILN LHAQLGNKWS TIAAHLPERS DNEIKNHWHT TLKKRATNFN 120 NKNNIESNTG RKITSVENQN ASANNNNNMH ENIVLESSEW SPKEPSSEAL SSIDYQQDIF 180 QEELANLEEI TSGSFWTEPF EVDSQNDFVA PSIDYCGLVC PPSPFIPHEF LSFFDLDHYN 240 YNW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400045417 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170361.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | M1CH27 | 0.0 | M1CH27_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067318 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 3e-54 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400045417 |
Entrez Gene | 107063249 |
Publications ? help Back to Top | |||
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